Coli, particularly in the toxin promoter region, suggests that toxin-inducing conditions might be similar for these pathogens. Our observation that toxin production by the O104:H4 outbreak strain is induced by a quinolone antibiotic, as previously seen with enterohemorrhagic E. Coli strains, suggests that caution is warranted in the use of certain classes of antibiotics to counteract this newly emerged pathogen.
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Coli, particularly in the toxin promoter region, suggests that toxin-inducing conditions might be similar for these pathogens. Our observation that toxin production by the O104:H4 outbreak strain is induced by a quinolone antibiotic, as previously seen with enterohemorrhagic E. Coli strains, suggests that caution is warranted in the use of certain classes of antibiotics to counteract this newly emerged pathogen.
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Several of the structurally divergent regions house genes that encode virulence factors. For example, C227-11 contains two lambdalike prophage elements, one of which contains the genes for Shiga toxin. The toxin-encoding phage is observed only in the outbreak isolate (, orange highlight), whereas the other prophage element (, blue highlight) is present in several additional O104:H4 isolates. Also reveals regions unique to the outbreak-strain chromosome, including structural variation in regions that include virulence-factor genes such as pic and the aai pathogenicity island (, green highlight). This particular region includes differences between the outbreak isolates and 55989 (Fig. Whole-Genome Phylogeny We used approximately 2.56 Mb of DNA, representing the conserved core genome found in 53 E. Coli and shigella genomes, including C277-11, other German outbreak strains, and the African O104:H4 strains, to generate a phylogenic tree depicting the evolution of E.
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