Panel C shows a comparison between the genome of the outbreak strain C227-11 (left semicircle) and the 55989 genome (right semicircle), mapped against the 55989 genome and the genome of the outbreak strain TY2482, respectively. The colored ribbons inside the innermost track (blue, pink, and purple) represent homologous mappings between the two genomes, C227-11 and 55989, indicating a high degree of similarity between these genomes. The red lines show the chromosomal positioning of repeat elements, such as insertion sequences and other mobile elements, which reveal more heterogeneity between the genomes than is evident from mapping regions of homology. We compared the sequence of C227-11 with the six O104:H4 strains from Africa, the previously released sequence data from outbreak-linked isolates, the available reference-genome sequences for the outbreak isolate TY2482, and the African enteroaggregative E.

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